ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zx9C2 - ECOD Domain | ECOD

ECOD/Domains/e6zx9C2

e6zx9C2

UID: 002770307

PDB

Range: C:-2-91
PDB: 6ZX9 chain C(all domains)

Molecule: Vpr protein fused to T4 lysozyme

3D Structure

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Related Domains

Browse other domains in VPR →

Classification

AArchitecturealpha bundles(a.7)

XX-groupViral accessory protein x (Vpx) / viral protein r (Vpr)(3788)

HH-groupViral accessory protein x (Vpx) / viral protein r (Vpr)(3788.1)

TT-groupViral accessory protein x (Vpx) / viral protein r (Vpr)(3788.1.1)

FFamilyVPR(3788.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

VPR/VPX protein

External Links

ECOD PDB View: 6ZX9 RCSB PDB: 6ZX9 PDBe: 6ZX9

Downloads

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