ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5sblA1 - ECOD Domain | ECOD

ECOD/Domains/e5sblA1

e5sblA1

UID: 002785751

PDB

Range: A:25-173
PDB: 5SBL chain A(all domains)

Molecule: CD44 antigen

3D Structure

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Related Domains

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Classification

AArchitecturea+b complex topology(a.14)

XX-groupC-type lectin-like(209)

HH-groupC-type lectin-like(209.1)

TT-groupC-type lectin-like(209.1.1)

FFamilyXlink(209.1.1.4)

Ligands

in contact, ≤ 4 Å

2-[(methylsulfonyl)methyl]-1H-benzimidazoleT6J

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOLEDO

Pfam Families

Extracellular link domain

ClanCL0056C_Lectin

External Links

ECOD PDB View: 5SBL RCSB PDB: 5SBL PDBe: 5SBL

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.