ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1w29B1 - ECOD Domain | ECOD

ECOD/Domains/e1w29B1

e1w29B1

UID: 000279588

PDB

Range: B:14-160
PDB: 1W29 chain B(all domains)
UniProt: P9WHE9 (all domains)
Gene: ribH

Molecule: 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

1-deoxy-1-{2,6,8-trioxo-7-[4-(phosphonooxy)butyl]-1,2,3,6,7,8-hexahydro-9H-purin-9-yl}-D-arabinitolTS1
drugDrugBank DB02135
Potassium ionK
metal

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 1W29 RCSB PDB: 1W29 PDBe: 1W29 UniProt: P9WHE9

Downloads

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+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.