ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7jtoL1 - ECOD Domain | ECOD

ECOD/Domains/e7jtoL1

e7jtoL1

UID: 002796108

PDB

Range: L:58-154
PDB: 7JTO chain L(all domains)

Molecule: von Hippel-Lindau disease tumor suppressor

3D Structure

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Related Domains

Browse other domains in VHL →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupPrealbumin-like(11.1.4)

FFamilyVHL(11.1.4.9)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamideVKA

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

VHL beta domain

ClanCL0287Transthyretin

External Links

ECOD PDB View: 7JTO RCSB PDB: 7JTO PDBe: 7JTO

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.