ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7omgA2 - ECOD Domain | ECOD

ECOD/Domains/e7omgA2

e7omgA2

UID: 002801096

PDB

Range: A:1-360
PDB: 7OMG chain A(all domains)

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_exo1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_B_exo1(2484.1.1.34)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03104DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 7OMG RCSB PDB: 7OMG PDBe: 7OMG

Downloads

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