ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7t1qA1 - ECOD Domain | ECOD

ECOD/Domains/e7t1qA1

e7t1qA1

UID: 002807645

PDB

Range: A:2-170,A:202-203,A:238-243,A:294-378
PDB: 7T1Q chain A(all domains)

Molecule: Succinyl-diaminopimelate desuccinylase

3D Structure

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Related Domains

Browse other domains in Peptidase_M20 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M20(2011.1.1.6)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
Zinc ionZN
metal

+ 2 additives (Acetate, Triethylene glycol)

Pfam Families

PF01546Peptidase_M20

Peptidase family M20/M25/M40

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 7T1Q RCSB PDB: 7T1Q PDBe: 7T1Q

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate

DrugBank DB14511

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.