ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7t1qB2 - ECOD Domain | ECOD

ECOD/Domains/e7t1qB2

e7t1qB2

UID: 002807648

PDB

Range: B:172-293
PDB: 7T1Q chain B(all domains)

Molecule: Succinyl-diaminopimelate desuccinylase

3D Structure

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Related Domains

Browse other domains in M20_dimer →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupBacterial exopeptidase dimerisation domain(304.25)

TT-groupBacterial exopeptidase dimerisation domain(304.25.1)

FFamilyM20_dimer(304.25.1.1)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
Zinc ionZN
metalwithin 5 Å only

+ 1 additive (Acetate)

Pfam Families

PF07687M20_dimer

Peptidase dimerisation domain

External Links

ECOD PDB View: 7T1Q RCSB PDB: 7T1Q PDBe: 7T1Q

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.