ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7se8A1 - ECOD Domain | ECOD

ECOD/Domains/e7se8A1

e7se8A1

UID: 002860699

PDB

Range: A:85-317
PDB: 7SE8 chain A(all domains)

Molecule: rRNA 2'-O-methyltransferase fibrillarin

3D Structure

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Related Domains

Browse other domains in Fibrillarin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyFibrillarin(2003.1.5.10)

Ligands

in contact, ≤ 4 Å

(5S)-3-methyl-7-(trifluoromethyl)pyrrolo[1,2-a]pyrazin-1(2H)-one8W1

+ 2 additives (Dimethyl sulfoxide, Formic acid)

Dimethyl sulfoxideDMS
DrugBank DB01093
Formic acidFMT

Pfam Families

PF01269Fibrillarin

Fibrillarin

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 7SE8 RCSB PDB: 7SE8 PDBe: 7SE8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.