ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7vdsA1 - ECOD Domain | ECOD

ECOD/Domains/e7vdsA1

e7vdsA1

UID: 002869982

PDB

Range: A:2-291
PDB: 7VDS chain A(all domains)

Molecule: Cyclin-dependent-like kinase 5, p25

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

5-fluoranyl-4-[[2-[(1R)-1-(1-methylpiperidin-4-yl)-1-oxidanyl-ethyl]-1,6-naphthyridin-7-yl]amino]-2-morpholin-4-yl-benzenecarbonitrile61U
Chloride ionCL

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

GlycerinGOL

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 7VDS RCSB PDB: 7VDS PDBe: 7VDS

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.