ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8d80B2 - ECOD Domain | ECOD

ECOD/Domains/e8d80B2

e8d80B2

UID: 002877181

PDB

Range: B:340-425
PDB: 8D80 chain B(all domains)

Molecule: Protein cereblon

3D Structure

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Related Domains

Browse other domains in Yippee-Mis18 →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupETN0001 domain-like(708)

HH-groupETN0001 domain-like(708.1)

TT-groupMss4-like(708.1.2)

FFamilyYippee-Mis18(708.1.2.3)

Ligands

in contact, ≤ 4 Å

Iberdomide8W7
drugDrugBank DB12101
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03226Yippee-Mis18

Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

ClanCL0080Beta-tent

External Links

ECOD PDB View: 8D80 RCSB PDB: 8D80 PDBe: 8D80

Downloads

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