ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8d87C1 - ECOD Domain | ECOD

ECOD/Domains/e8d87C1

e8d87C1

UID: 002877192

PDB

Range: C:293-391
PDB: 8D87 chain C(all domains)

Molecule: Spike glycoprotein E1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Alpha_E1_glycop →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyAlpha_E1_glycop(11.1.1.28)

Ligands

in contact, ≤ 4 Å

Holmium atomHO
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01589Alpha_E1_glycop

Alphavirus E1 glycoprotein

ClanCL0543Viral_gly_cn_dm

External Links

ECOD PDB View: 8D87 RCSB PDB: 8D87 PDBe: 8D87

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure