ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8d87C2 - ECOD Domain | ECOD

ECOD/Domains/e8d87C2

e8d87C2

UID: 002877193

PDB

Range: C:1-292
PDB: 8D87 chain C(all domains)

Molecule: Spike glycoprotein E1

3D Structure

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Related Domains

Browse other domains in Alpha_E1_glycop →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupViral glycoprotein, central and dimerisation domains-like(5090)

HH-groupViral glycoprotein, central and dimerisation domains(5090.1)

TT-groupViral glycoprotein, central and dimerisation domains(5090.1.1)

FFamilyAlpha_E1_glycop(5090.1.1.3)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
Holmium atomHO
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Pfam Families

PF01589Alpha_E1_glycop

Alphavirus E1 glycoprotein

ClanCL0543Viral_gly_cn_dm

External Links

ECOD PDB View: 8D87 RCSB PDB: 8D87 PDBe: 8D87

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.