ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7r3xA3 - ECOD Domain | ECOD

ECOD/Domains/e7r3xA3

e7r3xA3

UID: 002885095

PDB

Range: A:282-511
PDB: 7R3X chain A(all domains)

Molecule: DNA polymerase epsilon catalytic subunit A

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_exo1, DNA_pol_B_exo2 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_B_exo1, DNA_pol_B_exo2(2484.1.1.197)

Ligands

in contact, ≤ 4 Å

dATPDTP
drugDrugBank DB03222within 5 Å only
Calcium ionCA
metal

+ 1 additive (Acetate)

Pfam Families

PF03104DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

ClanCL0219RNase_H

PF10108DNA_pol_B_exo2

Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

ClanCL0219RNase_H

External Links

ECOD PDB View: 7R3X RCSB PDB: 7R3X PDBe: 7R3X

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.