ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2c5uB1 - ECOD Domain | ECOD

ECOD/Domains/e2c5uB1

e2c5uB1

UID: 000290168

PDB

Range: B:0-252
PDB: 2C5U chain B(all domains)
UniProt: P00971 (all domains)
Gene: 63

Molecule: RNA LIGASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNA_lig_T4_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRNA_lig_T4_1(206.1.3.24)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
Calcium ionCA
metal
Chloride ion

Pfam Families

PF09511RNA_lig_T4_1

RNA ligase

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 2C5U RCSB PDB: 2C5U PDBe: 2C5U UniProt: P00971

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.