ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8b1nA1 - ECOD Domain | ECOD

ECOD/Domains/e8b1nA1

e8b1nA1

UID: 002966737

PDB

Range: A:-2-245
PDB: 8B1N chain A(all domains)

Molecule: tRNA (guanine-N(1)-)-methyltransferase

3D Structure

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Related Domains

Browse other domains in tRNA_m1G_MT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilytRNA_m1G_MT(2488.1.1.3)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Chloride ionCL
Magnesium ionMG

Pfam Families

PF01746tRNA_m1G_MT

tRNA (Guanine-1)-methyltransferase TrmD

ClanCL0098SPOUT

External Links

ECOD PDB View: 8B1N RCSB PDB: 8B1N PDBe: 8B1N

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.