ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8b1nA2 - ECOD Domain | ECOD

ECOD/Domains/e8b1nA2

e8b1nA2

UID: 002966738

PDB

Range: A:246-430
PDB: 8B1N chain A(all domains)

Molecule: tRNA (guanine-N(1)-)-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltrn_RNA_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_4(2488.1.1.13)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Chloride ionCL

+ 1 additive (Glycerol)

GlycerolGOL

Pfam Families

PF09936Methyltrn_RNA_4

SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 8B1N RCSB PDB: 8B1N PDBe: 8B1N

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.