ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dcfA1 - ECOD Domain | ECOD

ECOD/Domains/e8dcfA1

e8dcfA1

UID: 002977545

PDB

Range: A:2-481
PDB: 8DCF chain A(all domains)

Molecule: tRNA-splicing ligase RtcB

3D Structure

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Related Domains

Browse other domains in RtcB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupHypothetical protein PH1602(304.106)

TT-groupHypothetical protein PH1602(304.106.1)

FFamilyRtcB(304.106.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Chloride ionCL
COPPER (II) IONCU

Pfam Families

tRNA-splicing ligase RtcB

External Links

ECOD PDB View: 8DCF RCSB PDB: 8DCF PDBe: 8DCF

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.