ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8dcfB1 - ECOD Domain | ECOD

ECOD/Domains/e8dcfB1

e8dcfB1

UID: 002977546

PDB

Range: B:2-481
PDB: 8DCF chain B(all domains)

Molecule: tRNA-splicing ligase RtcB

3D Structure

Loading viewer...

Related Domains

Browse other domains in RtcB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupHypothetical protein PH1602(304.106)

TT-groupHypothetical protein PH1602(304.106.1)

FFamilyRtcB(304.106.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Chloride ionCL
COPPER (II) IONCU

Pfam Families

tRNA-splicing ligase RtcB

External Links

ECOD PDB View: 8DCF RCSB PDB: 8DCF PDBe: 8DCF

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.