ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8amtAAA1 - ECOD Domain | ECOD

ECOD/Domains/e8amtAAA1

e8amtAAA1

UID: 002981331

PDB

Range: AAA:4-132
PDB: 8AMT chain AAA(all domains)

Molecule: Replication protein RepB

3D Structure

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Related Domains

Browse other domains in Rep_OBD →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyRep_OBD(304.55.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
MANGANESE (II) IONMN
metal

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

PF01719Rep_OBD

Plasmid replication protein, origin binding domain

ClanCL0169Rep

External Links

ECOD PDB View: 8AMT RCSB PDB: 8AMT PDBe: 8AMT

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.