ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bb3L2 - ECOD Domain | ECOD

ECOD/Domains/e8bb3L2

e8bb3L2

UID: 002983306

PDB

Range: L:155-209
PDB: 8BB3 chain L(all domains)

Molecule: von Hippel-Lindau disease tumor suppressor

3D Structure

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Related Domains

Browse other domains in VHL_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupSOCS box-like(4215)

HH-groupSOCS box-like(4215.1)

TT-groupSOCS box-like(4215.1.1)

FFamilyVHL_C(4215.1.1.2)

Ligands

in contact, ≤ 4 Å

Thiocyanate ionSCN
~{N}-[5-[4-[2-[2-[2-[2-[3-[[3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-propoxy]ethoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-3~{H}-pyridine-3-carboxamideQ3X

Pfam Families

VHL box domain

ClanCL0642SOCS_box

External Links

ECOD PDB View: 8BB3 RCSB PDB: 8BB3 PDBe: 8BB3

Downloads

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within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.