ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8d4iA1 - ECOD Domain | ECOD

ECOD/Domains/e8d4iA1

e8d4iA1

UID: 002985851

PDB

Range: A:52-316
PDB: 8D4I chain A(all domains)

Molecule: D-ornithine/D-lysine decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 4 additives (Acetate, Dimethyl sulfoxide, HEPES, …)

AcetateACT

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 8D4I RCSB PDB: 8D4I PDBe: 8D4I

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Dimethyl sulfoxideDMS

DrugBank DB01093

HEPESEPE

DrugBank DB16872

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.