ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dbkF2 - ECOD Domain | ECOD

ECOD/Domains/e8dbkF2

e8dbkF2

UID: 002986725

PDB

Range: F:163-317
PDB: 8DBK chain F(all domains)

Molecule: Ribose-phosphate pyrophosphokinase 1

3D Structure

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Related Domains

Browse other domains in Pribosyltran, Pribosyl_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPRTase-like(7573)

HH-groupPRTase-like(7573.1)

TT-groupPRTase-like(7573.1.1)

FFamilyPribosyltran, Pribosyl_synth(7573.1.1.9)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
5-O-phosphono-alpha-D-ribofuranoseHSX
Magnesium ionMG

Pfam Families

PF00156Pribosyltran

Phosphoribosyl transferase domain

ClanCL0533PRTase-like

PF14572Pribosyl_synth

Phosphoribosyl synthetase-associated domain

ClanCL0533PRTase-like

External Links

ECOD PDB View: 8DBK RCSB PDB: 8DBK PDBe: 8DBK

Downloads

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metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.