ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dbmI2 - ECOD Domain | ECOD

ECOD/Domains/e8dbmI2

e8dbmI2

UID: 002986755

PDB

Range: I:2-162
PDB: 8DBM chain I(all domains)

Molecule: Ribose-phosphate pyrophosphokinase 1

3D Structure

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Related Domains

Browse other domains in Pribosyltran_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPRTase-like(7573)

HH-groupPRTase-like(7573.1)

TT-groupPRTase-like(7573.1.1)

FFamilyPribosyltran_N(7573.1.1.2)

Ligands

in contact, ≤ 4 Å

5-O-phosphono-alpha-D-ribofuranosyl diphosphatePRP
drugDrugBank DB01632
Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Pfam Families

PF13793Pribosyltran_N

N-terminal domain of ribose phosphate pyrophosphokinase

ClanCL0533PRTase-like

External Links

ECOD PDB View: 8DBM RCSB PDB: 8DBM PDBe: 8DBM

Downloads

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Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.