ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dh1B1 - ECOD Domain | ECOD

ECOD/Domains/e8dh1B1

e8dh1B1

UID: 002987371

PDB

Range: B:552-778
PDB: 8DH1 chain B(all domains)

Molecule: T7 RNA polymerase

3D Structure

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Related Domains

Browse other domains in RNA_pol →

Classification

AArchitecturealpha arrays(a.6)

XX-grouphelical bundle in Bacillus stearothermophilus-like DNA polymerase I(4964)

HH-grouphelical bundle in Bacillus stearothermophilus-like DNA polymerase I(4964.1)

TT-grouphelical bundle in Bacillus stearothermophilus-like DNA polymerase I(4964.1.1)

FFamilyRNA_pol(4964.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-1H-pyrrole-2-carbaldehydeS8L

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF00940RNA_pol

DNA-dependent RNA polymerase

External Links

ECOD PDB View: 8DH1 RCSB PDB: 8DH1 PDBe: 8DH1

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.