ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8gvmE1 - ECOD Domain | ECOD

ECOD/Domains/e8gvmE1

e8gvmE1

UID: 002994303

PDB

Range: E:5-109
PDB: 8GVM chain E(all domains)

Molecule: Cytochrome c oxidase subunit 5A

3D Structure

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Related Domains

Browse other domains in COX5A →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupCytochrome c oxidase subunit E(109.7)

TT-groupCytochrome c oxidase subunit E(109.7.1)

FFamilyCOX5A(109.7.1.1)

Ligands

in contact, ≤ 4 Å

(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEPSC

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Cytochrome c oxidase subunit Va

External Links

ECOD PDB View: 8GVM RCSB PDB: 8GVM PDBe: 8GVM

Downloads

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