ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8hmsD3 - ECOD Domain | ECOD

ECOD/Domains/e8hmsD3

e8hmsD3

UID: 002995883

PDB

Range: D:14-116,D:219-396
PDB: 8HMS chain D(all domains)

Molecule: Pyruvate kinase PKM

3D Structure

Loading viewer...

Related Domains

Browse other domains in PK →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyPK(2002.1.1.11)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, Oxalate ion)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOL

Pfam Families

Pyruvate kinase, barrel domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 8HMS RCSB PDB: 8HMS PDBe: 8HMS

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Oxalate ionOXL

Shown in the structure viewer. Drug annotations from DrugDomain.