ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e7mdlD2 - ECOD Domain | ECOD

ECOD/Domains/e7mdlD2

e7mdlD2

UID: 002996197

PDB

Range: D:17-332
PDB: 7MDL chain D(all domains)

Molecule: O-phosphoseryl-tRNA(Sec) selenium transferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in SepSecS →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySepSecS(7577.1.1.13)

Ligands

in contact, ≤ 4 Å

(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATEPLR

+ 1 additive (Citrate anion)

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05889SepSecS

O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 7MDL RCSB PDB: 7MDL PDBe: 7MDL

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure