ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7u8zD1 - ECOD Domain | ECOD

ECOD/Domains/e7u8zD1

e7u8zD1

UID: 003003847

PDB

Range: D:442-798
PDB: 7U8Z chain D(all domains)

Molecule: Hdac6 protein

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
4-({N-[2-(benzylamino)-2-oxoethyl]-4-(dimethylamino)benzamido}methyl)-3-fluoro-N-hydroxybenzamideM0I
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 7U8Z RCSB PDB: 7U8Z PDBe: 7U8Z

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 3 additives (Malonate Ion, Acetate, 1,2-ETHANEDIOL)

Malonate IonMLI
DrugBank DB02201
AcetateACT
DrugBank DB14511within 5 Å only
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.