ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8a6cA1 - ECOD Domain | ECOD

ECOD/Domains/e8a6cA1

e8a6cA1

UID: 003022983

PDB

Range: A:1-322
PDB: 8A6C chain A(all domains)

Molecule: Rhodopsin

3D Structure

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Related Domains

Browse other domains in 7tm_1,Rhodopsin_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamily7tm_1,Rhodopsin_N(5001.1.1.2)

Ligands

in contact, ≤ 4 Å

Lauric acidDAO
drugDrugBank DB03017
N-AcetylglucosamineNAG
drugDrugBank DB00141
Palmitic Acid

Pfam Families

7 transmembrane receptor (rhodopsin family)

ClanCL0192GPCR_A

PF10413Rhodopsin_N

Amino terminal of the G-protein receptor rhodopsin

External Links

ECOD PDB View: 8A6C RCSB PDB: 8A6C PDBe: 8A6C

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03796

Acetyl groupACE

(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC

RetinalRET

Shown in the structure viewer. Drug annotations from DrugDomain.