ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8c1nA1 - ECOD Domain | ECOD

ECOD/Domains/e8c1nA1

e8c1nA1

UID: 003025563

PDB

Range: A:1-377
PDB: 8C1N chain A(all domains)

Molecule: RNA-directed RNA polymerase 3D-POL

3D Structure

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Related Domains

Browse other domains in RdRP_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRdRP_1(304.48.1.8)

Ligands

in contact, ≤ 4 Å

Triphosphoric acid3PO
drugDrugBank DB03896

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511

Pfam Families

Viral RNA-dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 8C1N RCSB PDB: 8C1N PDBe: 8C1N

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.