ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8c5pB1 - ECOD Domain | ECOD

ECOD/Domains/e8c5pB1

e8c5pB1

UID: 003025612

PDB

Range: B:2-217
PDB: 8C5P chain B(all domains)

Molecule: Oxygen-insensitive NAD(P)H nitroreductase

3D Structure

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Related Domains

Browse other domains in Nitroreductase →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFMN-dependent nitroreductase-like(304.103)

TT-groupFMN-dependent nitroreductase-like(304.103.1)

FFamilyNitroreductase(304.103.1.1)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247

+ 3 additives (Acetate, Dimethyl sulfoxide, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511

Pfam Families

PF00881Nitroreductase

Nitroreductase family

ClanCL0529FMN-dep-NRtase

External Links

ECOD PDB View: 8C5P RCSB PDB: 8C5P PDBe: 8C5P

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093within 5 Å only

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.