ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cyfB1 - ECOD Domain | ECOD

ECOD/Domains/e8cyfB1

e8cyfB1

UID: 003027053

PDB

Range: B:450-546
PDB: 8CYF chain B(all domains)

Molecule: RNA polymerase sigma factor, DNA-directed RNA polymerase subunit beta chimera,DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in Sigma70_r4 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySigma70_r4(101.1.1.31)

Ligands

in contact, ≤ 4 Å

Iron/sulfur clusterSF4

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04545Sigma70_r4

Sigma-70, region 4

ClanCL0123HTH

External Links

ECOD PDB View: 8CYF RCSB PDB: 8CYF PDBe: 8CYF

Downloads

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