ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8d96B1 - ECOD Domain | ECOD

ECOD/Domains/e8d96B1

e8d96B1

UID: 003027286

PDB

Range: B:270-456
PDB: 8D96 chain B(all domains)

Molecule: DNA primase large subunit

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_primase_lrg →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCryptochrome/photolyase FAD-binding domain-related(182)

HH-groupCryptochrome/photolyase FAD-binding domain-related(182.1)

TT-groupFe-S cluster domain of DNA primase(182.1.2)

FFamilyDNA_primase_lrg(182.1.2.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04104DNA_primase_lrg

Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

ClanCL0242DNA_primase_lrg

External Links

ECOD PDB View: 8D96 RCSB PDB: 8D96 PDBe: 8D96

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure