ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8efyA3 - ECOD Domain | ECOD

ECOD/Domains/e8efyA3

e8efyA3

UID: 003028227

PDB

Range: A:5-166
PDB: 8EFY chain A(all domains)

Molecule: Holliday junction ATP-dependent DNA helicase RuvB

3D Structure

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Related Domains

Browse other domains in RuvB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRuvB_N(2004.1.1.125)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Phosphothiophosphoric acid-adenylate esterAGS
Magnesium ionMG

Pfam Families

Holliday junction DNA helicase RuvB P-loop domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 8EFY RCSB PDB: 8EFY PDBe: 8EFY

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.