ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1y7bB1 - ECOD Domain | ECOD

ECOD/Domains/e1y7bB1

e1y7bB1

UID: 000030323

PDB

Range: B:325-534
PDB: 1Y7B chain B(all domains)
UniProt: Q97DM1 (all domains)
Gene: xynD

Molecule: Beta-xylosidase, family 43 glycosyl hydrolase

3D Structure

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Related Domains

Browse other domains in GH43_C2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyGH43_C2(10.1.1.41)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 3 additives (HEPES, Sulfate ion, Glycerol)

HEPESEPE
DrugBank DB16872
Sulfate ion

Pfam Families

PF17851GH43_C2

Beta xylosidase C-terminal Concanavalin A-like domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 1Y7B RCSB PDB: 1Y7B PDBe: 1Y7B UniProt: Q97DM1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.