ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7yflC2 - ECOD Domain | ECOD

ECOD/Domains/e7yflC2

e7yflC2

UID: 003039525

PDB

Range: C:395-535,C:757-796
PDB: 7YFL chain C(all domains)

Molecule: Glutamate receptor ionotropic, NMDA 1

3D Structure

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Related Domains

Browse other domains in SBP_bac_3, Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3, Lig_chan-Glu_bd(7523.1.1.52)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
N-AcetylglucosamineNAG
drugDrugBank DB00141
Glutamic acid

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 7YFL RCSB PDB: 7YFL PDBe: 7YFL

Downloads

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drugDrugBank DB00142within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.