ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8gn0B1 - ECOD Domain | ECOD

ECOD/Domains/e8gn0B1

e8gn0B1

UID: 003057931

PDB

Range: B:2-328,B:445-506
PDB: 8GN0 chain B(all domains)

Molecule: Photosystem II CP47 reaction center protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 8GN0 RCSB PDB: 8GN0 PDBe: 8GN0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03426

Heptyl 1-ThiohexopyranosideHTG

drugDrugBank DB04450

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG

drugDrugBank DB02043

CryptoxanthinRRX

drugDrugBank DB15914within 5 Å only

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Unknown ligandUNL

+ 3 additives (Dimethyl sulfoxide, Glycerin, Dodecyl-beta-d-maltoside)

Dimethyl sulfoxideDMS
DrugBank DB01093
GlycerinGOL
DrugBank DB09462
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.