ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8e07A1 - ECOD Domain | ECOD

ECOD/Domains/e8e07A1

e8e07A1

UID: 003058224

PDB

Range: A:159-416
PDB: 8E07 chain A(all domains)

Molecule: Heparanase 50 kDa subunit

3D Structure

Loading viewer...

Related Domains

Browse other domains in Glyco_hydro_79n →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_79n(2002.1.1.115)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, Ammonium ion, Sulfate ion)

AcetateACT
DrugBank DB14511
Ammonium ionNH4
Sulfate ionSO4

Shown in the structure viewer.

Pfam Families

PF03662Glyco_hydro_79n

Glycosyl hydrolase family 79, N-terminal domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 8E07 RCSB PDB: 8E07 PDBe: 8E07

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.