ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8p5sA2 - ECOD Domain | ECOD

ECOD/Domains/e8p5sA2

e8p5sA2

UID: 003060834

PDB

Range: A:360-814
PDB: 8P5S chain A(all domains)

Molecule: 2-oxoglutarate dehydrogenase E1/E2 component

3D Structure

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Related Domains

Browse other domains in E1_dh →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyE1_dh(7574.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Thiamine diphosphateTPP

+ 1 additive (HEPES)

HEPESEPE

Pfam Families

Dehydrogenase E1 component

ClanCL0254THDP-binding

External Links

ECOD PDB View: 8P5S RCSB PDB: 8P5S PDBe: 8P5S

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.