ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8w6xS1 - ECOD Domain | ECOD

ECOD/Domains/e8w6xS1

e8w6xS1

UID: 003062353

PDB

Range: S:184-267
PDB: 8W6X chain S(all domains)

Molecule: Periplasmic [NiFe] hydrogenase small subunit

3D Structure

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Related Domains

Browse other domains in NiFe_hyd_SSU_C →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024)

HH-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024.1)

TT-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024.1.1)

FFamilyNiFe_hyd_SSU_C(4024.1.1.1)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S
Iron/sulfur clusterSF4

+ 1 additive ((4S)-2-METHYL-2,4-PENTANEDIOL)

(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14720NiFe_hyd_SSU_C

NiFe/NiFeSe hydrogenase small subunit C-terminal

External Links

ECOD PDB View: 8W6X RCSB PDB: 8W6X PDBe: 8W6X

Downloads

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