ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8a1uB1 - ECOD Domain | ECOD

ECOD/Domains/e8a1uB1

e8a1uB1

UID: 003062374

PDB

Range: B:20-414
PDB: 8A1U chain B(all domains)

Molecule: Na(+)-translocating NADH-quinone reductase subunit B

3D Structure

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Related Domains

Browse other domains in NQR2_RnfD_RnfE →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupAmmonium transporter-related(5049)

HH-groupAmmonium transporter-related(5049.1)

TT-groupNa(+)-translocating NADH-quinone reductase subunit B(5049.1.3)

FFamilyNQR2_RnfD_RnfE(5049.1.3.1)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
RiboflavinRBF
drugDrugBank DB00140
Ubiquinone Q2

Pfam Families

PF03116NQR2_RnfD_RnfE

NQR2, RnfD, RnfE family

External Links

ECOD PDB View: 8A1U RCSB PDB: 8A1U PDBe: 8A1U

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB08690

1,2-Distearoyl-sn-glycerophosphoethanolamine3PE

Sodium ionNA

metal

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.