ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8a45D2 - ECOD Domain | ECOD

ECOD/Domains/e8a45D2

e8a45D2

UID: 003066875

PDB

Range: D:33-315
PDB: 8A45 chain D(all domains)

Molecule: 1-deoxy-D-xylulose-5-phosphate synthase

3D Structure

Loading viewer...

Related Domains

Browse other domains in DXP_synthase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyDXP_synthase_N(7574.1.1.11)

Ligands

in contact, ≤ 4 Å

2-Acetyl-3-[(4-Amino-2-Methyl-5-Pyrimidinyl)Methyl]-4-Methyl-5-(4,6,6-Trihydroxy-3,5-Dioxa-4,6-Diphosphahex-1-Yl)Thiazolium Inner Salt P,P'-DioxideHTL
drugDrugBank DB02410
Calcium ionCA
metal
Magnesium ionMG

Pfam Families

PF13292DXP_synthase_N

1-deoxy-D-xylulose-5-phosphate synthase

ClanCL0254THDP-binding

External Links

ECOD PDB View: 8A45 RCSB PDB: 8A45 PDBe: 8A45

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.