ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8aizAAA1 - ECOD Domain | ECOD

ECOD/Domains/e8aizAAA1

e8aizAAA1

UID: 003067274

PDB

Range: AAA:187-306
PDB: 8AIZ chain AAA(all domains)

Molecule: Replicase polyprotein 1ab

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamideMIJ

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 8AIZ RCSB PDB: 8AIZ PDBe: 8AIZ

Downloads

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