ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8b79B1 - ECOD Domain | ECOD

ECOD/Domains/e8b79B1

e8b79B1

UID: 003068082

PDB

Range: B:282-511
PDB: 8B79 chain B(all domains)

Molecule: DNA polymerase epsilon catalytic subunit A

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_exo1, DNA_pol_B_exo2 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDNA_pol_B_exo1, DNA_pol_B_exo2(2484.1.1.197)

Ligands

in contact, ≤ 4 Å

Uridine 5'-triphosphateUTP
drugDrugBank DB04005
Calcium ionCA
metal

+ 1 additive (Acetate)

Pfam Families

PF03104DNA_pol_B_exo1

DNA polymerase family B, exonuclease domain

ClanCL0219RNase_H

PF10108DNA_pol_B_exo2

Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

ClanCL0219RNase_H

External Links

ECOD PDB View: 8B79 RCSB PDB: 8B79 PDBe: 8B79

Downloads

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AcetateACT

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.