ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cj7C1 - ECOD Domain | ECOD

ECOD/Domains/e8cj7C1

e8cj7C1

UID: 003072584

PDB

Range: C:442-798
PDB: 8CJ7 chain C(all domains)

Molecule: Histone deacetylase 6

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD
Potassium ionK
metal
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 8CJ7 RCSB PDB: 8CJ7 PDBe: 8CJ7

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.