ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dfdB3 - ECOD Domain | ECOD

ECOD/Domains/e8dfdB3

e8dfdB3

UID: 003073822

PDB

Range: B:2-213
PDB: 8DFD chain B(all domains)

Molecule: Nitrogenase molybdenum-iron protein beta chain

3D Structure

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Related Domains

Browse other domains in Oxidored_nitro,DUF3364 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyOxidored_nitro,DUF3364(2007.1.14.2)

Ligands

in contact, ≤ 4 Å

FE(8)-S(7) CLUSTERCLF
FE (III) IONFE
metal
Iron/sulfur clusterSF4

Pfam Families

PF00148Oxidored_nitro

Nitrogenase component 1 type Oxidoreductase

ClanCL0043Chelatase

PF11844DUF3364

Domain of unknown function (DUF3364)

ClanCL0043Chelatase

External Links

ECOD PDB View: 8DFD RCSB PDB: 8DFD PDBe: 8DFD

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

3-HYDROXY-3-CARBOXY-ADIPIC ACIDHCA

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.