ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8f93B1 - ECOD Domain | ECOD

ECOD/Domains/e8f93B1

e8f93B1

UID: 003077934

PDB

Range: B:31-334
PDB: 8F93 chain B(all domains)

Molecule: WD repeat-containing protein 5

3D Structure

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Related Domains

Browse other domains in WD40, eIF2A, Beta-prop_WDR5 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyWD40, eIF2A, Beta-prop_WDR5(5.1.4.256)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
3-ethynyl-5-{[(3R)-4-{1-[(2-methoxyphenyl)methyl]-1H-benzimidazole-5-carbonyl}-3-methylpiperazin-1-yl]methyl}benzene-1-sulfonyl fluorideXKN

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

WD domain, G-beta repeat

ClanCL0186Beta_propeller

Eukaryotic translation initiation factor eIF2A

ClanCL0186Beta_propeller

PF25175Beta-prop_WDR5

WDR5 beta-propeller domain

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 8F93 RCSB PDB: 8F93 PDBe: 8F93

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.