ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8gjtA1 - ECOD Domain | ECOD

ECOD/Domains/e8gjtA1

e8gjtA1

UID: 003085469

PDB

Range: A:256-473
PDB: 8GJT chain A(all domains)

Molecule: HIV-1 LM/HT Clade A/E CRF01 gp120 core

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
(3S)-N-(4-chloro-3-fluorophenyl)-1-[(3R,5S)-3,4,5-trimethylpiperazine-1-carbonyl]piperidine-3-carboxamideZNF

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 8GJT RCSB PDB: 8GJT PDBe: 8GJT

Downloads

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