ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r0911 - ECOD Domain | ECOD

ECOD/Domains/e1r0911

e1r0911

UID: 000030922

PDB

Range: 1:17-289
PDB: 1R09 chain 1(all domains)
UniProt: P03303 (all domains)

Molecule: HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

3D Structure

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Related Domains

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Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

3-METHOXY-6-[4-(3-METHYLPHENYL)-1-PIPERAZINYL]PYRIDAZINEJEN
drugDrugBank DB08017

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 1R09 RCSB PDB: 1R09 PDBe: 1R09 UniProt: P03303

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.