ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8pyzF1 - ECOD Domain | ECOD

ECOD/Domains/e8pyzF1

e8pyzF1

UID: 003102292

PDB

Range: F:1-347
PDB: 8PYZ chain F(all domains)

Molecule: OmpK36

3D Structure

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Related Domains

Browse other domains in Porin_1 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupPorin(5084.5.1)

FFamilyPorin_1(5084.5.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((Hydroxyethyloxy)Tri(Ethyloxy)Octane, Dodecyldimethylamine N-oxide)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233
Dodecyldimethylamine N-oxideLDA
DrugBank DB04147

Shown in the structure viewer.

Pfam Families

PF00267Porin_1

Gram-negative porin

ClanCL0193MBB

External Links

ECOD PDB View: 8PYZ RCSB PDB: 8PYZ PDBe: 8PYZ

Downloads

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Drug annotations from DrugDomain.